IfLS EPSRC Summer Bursaries 2014
by Rachel Greenhill
Rachel Greenhill – ‘Optimising the analysis of biomarkers to indicate metabolic changes in loaded soft tissues’
Iām a Chemistry student moving into the 3rd year of my Masters. Iāll be working with both Prof. Dan Bader and Dr. John Langley to optimise the analysis of metabolites in sweat obtained from both loaded and unloaded tissues using various separation sciences and mass spectrometry. I specifically wanted to work on an analytical research project, as I have a keen interest in this area, so Iām looking forward to gaining invaluable experience in analytical science.
Pressure ulcers (PU) result from sustained mechanical pressure on soft tissues, leading to ischemia, and the potential breakdown of the tissue. PUs often occur in many clinical conditions, e.g in bedridden or chair confined patients, and in addition to being a disabling chronic condition, greatly affecting a patients quality of life, the UK spends Ā£4 billion per year in associated treatment.Ā
Ā Prevention of pressure ulcers requires early detection of changes in the soft tissue to be effective. This project looks to develop a non-invasive approach to examining loaded skin tissues, via the analysis of biomarkers in sweat, such as lactate, urate and purines, which have previously been shown to be elevated in loading and reperfusion periods. We intend to optimise the conditions in ultra high performance liquid chromatography and mass spectrometry (UHPLC-MS) to determine the limits of detection for the metabolites with the aim of creating a standard operating procedure for purine detection.
This work will support the EPSRC/NIHR HTC Partnership Award: āMedical devices and vulnerable skin: Optimising safety in designā, and will hopefully go on to provide a starting reference for a preventative biosensor for soft tissues damage. On a personal level, next year Iāll be undertaking a practical project for the duration of the year, and in my final year Iāll be conducting research as a guest in another university abroad during a 6 month placement, so the knowledge and skills obtained over this summer will be highly beneficial and I believe will help me make the most of these future opportunities.
Ageing USRG EPSRC Summer Busaries 2014
by Michalis Rodosthenous
Michalis Rodosthenous – ‘Development of an open-source finite element model of the knee jointā
I have just completed my 3rd year in Mechanical Engineering at the University of Southampton and after this summer I will be continuing with my 4th and final year of my Master in Engineering (MEng) degree. My chosen theme is Mechatronics but through my 3rd year Individual Project (āUsing graphics rendering techniques for engineering data visualisationā) and modules such as Finite Element Analysis and Orthopaedics Biomechanics I have developed an interest in modeling, data analysis and data visualisation. Ā
This internship project entitled āDevelopment of an open-source finite element model of the knee jointā is supervised by Dr Georges Limbert and involves the development of an advanced finite element model of the knee joint as part of the international SimTK (http://simtk.org). The geometry of the natural knee joint has been acquired from MRI data as part of the OpenKnee project.
This internship project aims to implement state-of-the-art models for soft tissues structures (ligaments, cartilage and menisci) in the commercial finite element code ABAQUS (www.simulia.com) and run a series of finite element analyses to simulate particular knee activities such as flexion. Moreover, advanced rendering techniques will be used to produce attractive visualisations of the models developed. Ā
The finite element models which will be developed through this research project will be made available to the bioengineering research community where they can be used to study the interplay between mechanical properties of soft tissues, knee kinematics and loading conditions for a variety of different scenarios.
Nanoscience USRG – EPSRC Summer Bursaries 2014
by Alexander Jantzen
Alexander Jantzen – ‘Enhanced sensitivity Golay cell’
In recent years there has been great advancements in production of Terahertz (THz) emitters, which in turn have lead to a need in developing new reliable, sensitive detection mechanism. Terahertz refers to the part of the electromagnetic spectrum with a frequency of 109 Hz. Specifically THz radiation is consider to be in the region from 0.3 THz to 30 THz, bridging the gap between infrared and microwaves. The most common way of measuring THz radiation is using a time domain spectrometer (TDS) as it has a very high signal-to-noise ratio, however it has to be used as an emitter/receiver package preventing detection of asynchronous THz emission.
Now that the THz region is more easily accessible, part in thanks to the development of the quantum cascade laser (QCL), it is finding its way into an increasingly wide variety of applications. A few examples of this are, non-invasive detection of cancerous cells, material analysis, homeland security, information and communications technology, and more.
The current alternative to a TDS is using a bolometer, however it suffers from difficult operation and is impractical due to it requiring liquid Helium temperatures. Golay cells were forgotten for many years, but recently started to compete with bolometers as they are far more practical, cheaper and are slowly becoming as sensitive in the infrared/THz region.
Picture 1 & 2, THz Time Domain Spectrometer with receiver-transmitter package (left) and a Quantum Cascade Laser with a Golay cell detector (right).
I have just finished my 3rd year of my Masters of Physics with experimental research (MPhys) and I will be spending my summer working on the project of enhancing the sensitivity of a Golay cell through applying physical principles and engineering solutions. A Golay cell is an apparatus based on the simple concept of thermal expansion of a gas caused by THz radiation, whereby a membrane will push outwards. This expansion can be measured by deflecting an optical beam off the membrane, allowing the intensity of THz radiation to be determined. My aim is to finalise a design for a Golay cell allowing us to create them on site. Then, further to this, apply an interferometer to our cells thereby allowing for increased sensitivity of the measurements. Through refining the design and quantising the error sources, the overarching goal for the future will be to make a āGolay Cameraā. Ā
Picture 3, Interference pattern from interferometer.
I will continue to work on this project beyond the summer as I intend to use it as my final year, masters research project. During this I expect that an array or a matrix of cells can be used to generate a camera for THz, which currently no company manufacture. This suggests to me that, with a good design, an industrial collaboration could be a very plausible outcome for the final product.
Nanoscience USRG – EPSRC Summer Bursaries 2014
by Christopher Dawson
Chris Dawson – ‘Cavity Cooling of the motion of Nanoparticles’
My name is Chris Dawson, and I am an undergraduate and have recently finished the third year of my four year ‘Physics with Photonics’ MPhys course at the University of Southampton. My internship is with the ‘Nano’ USRG in the School of Physics and Astronomy. I will be working with Dr Hendrik Ulbricht, a researcher in the department, as well as a Phd student and a post-doc. We will be investigating the Cavity Cooling of the motion of Nanoparticles.
Cooling the motion of atoms was the starting point of a very active research field for quantum optics experiments. The extension of the ability to cool much more massive particles to the current tool set would enable a number of interesting experiments and applications. Interestingly, the same cooling principle ā sideband resolved resonant cooling – as used for trapping ions and neutral atoms, can be applied to very massive opto-mechanical systems. This is the method that we will be using in the summer.
In this project we will trap a single dielectric polyethylene nanoparticle in the optical field inside a laser cavity and use the detuning of the optical resonance to the mechanical resonance to achieve sideband resolved cooling. The first step will be to lock a cavity to a stabilized laser (1kHz linewidth) at 1550 nm. This should be achieved during the period of the summer project. This will be the first part of a much more long term project in which we will be attempting to cool these nanoparticles in incredibly low temperatures, entering a regime in which the movement of the particles begins to obey a very bizarre set of quantum behaviours. This research could be a step towards systems that will be used in ultra-high precision sensing devices.
The internship project will lead on to my Masters final project next year in which myself and another undergraduate will continue this research.
Complexity USRG – EPSRC Summer Bursaries 2014
by Peter Prince
Peter Prince: ‘An agent-based model to explore time allocation towards foraging in response to rainfall and temperature conditions in large African herbivores’
I am a computer science student moving from my third year to my final Masters year in September. I have an existing interest in ecological modelling, previous creating an agent-based model of brown bears, attempting to minimise fatal interactions between humans and bears in American national parks. My interest in this field comes from wanting to take computer science knowledge I’ve gained and use it to help solve problems in other fields, such as ecological problems.
The plan for the research project is based on GPS tracking data on a number of large herbivores in Africa. Over a number of years a large dataset has been amassed, documenting the movement of various species such as antelope, wildebeest and buffalo across areas of Africa. By exploring the work done in previous papers on similar data, the idea of exploring the behaviour of certain herbivores in response to drought and extreme temperatures was decided upon.
For some species, effects such as high rainfall have been shown to cause population declines due to increased predation when foraging at night. However, certain species experience declines after periods of high rainfall, with long grass growing and providing more cover for predators during the day. It is effects such as these which our project aims to explore, optimising time allocation throughout the day and night.
The datasets do not record individual activities the tracked animals are performing, however research exists looking into translating movement rates into likely activity states. Taking movement rates, locations and previous behaviours, estimates can be made about the actions of each animal at a specific time step. Using these techniques our project team plans to build a model based on the activity states in response to recorded conditions.
The model itself is planned to be an agent-based model, taking into account the previous behaviours of each individual agent as well as its herd to govern future behaviour. Such models are extremely difficult to mathematically simulate, and make a lot of assumptions to minimise the complexity of the model. Agent-based models allow for more complex individual behaviour, which is a perfect fit for the problem being investigated.
In my fourth and final year of my degree I will be taking part in a year-long group design project, based on modelling and artificial intelligence. I feel that my work done as a part of this research project will help to equip me for the challenges of this style of research using artificial intelligence techniques.
Ageing USRG – EPSRC Summer Bursaries 2014
by Charles Saunders
Charlie Saunders: ‘Analysis of blood flow control in the brain’
Iāve just completed my second year in the Acoustical Engineering MEng program. I have a particular interest in Signal Processing, specifically biomedical, so Iām thrilled to be working with David Simpson on the analysis of blood flow project, as part of the SPCG (Signal Processing & Control Group) in the ISVR (Institute of Sound and Vibration Research).
The main project is on the analysis of blood flow in the brain. The aim is to better understand the effect of the constriction and dilation of blood vessels within the brain as a response to blood pressure changes (known as the auto regulatory system), particularly in healthy individuals. Itās a great project to work on as I get to apply my knowledge of signal processing to data which is collected in collaboration with the Southampton General Hospital, as well as learn about the workings of various machines such as ECGās. Another side project I am working on involves the creation of a program used by medical staff to calibrate a physiotherapy machine designed to measure the strength and mobility of a personās wrist.
Image: Arm Calibration Program)
Ā My next project will by my third year individual project entitled āA computational tool for the assessment of local 3D strain fields in bone tissueā which is also relevant to biomedical signal processing.Ā I then hope to undertake another research internship in the summer between my 3rd and 4th year, and I will also have a group research project in my 4th year.Ā After I complete my degree, I am hoping to start a Phd. My research placement will provide me with fantastic experience and knowledge which I will be able to apply to all of these, and more in the future.
Lights Camera Action
by Ian Dawson via Digital Humanities | Digital Humanities
Taplow House, a housing block within the notorious Aylesbury estate, southeast London, named after Taeppa’s Low, a 7th Century Anglo-Saxon burial mound 29 miles west along the River Thames, this 1960’s housing development, famous for the Channel 4 ident, the one where the camera pans across desolate concrete walkways. The regeneration is underway, a project that will see Taplow House …
Research data and MOOCosystems
by Graeme Earl via WSI | WSI
I’ve spoken at a number of events recently about what I see as the potential for joining up MOOCs in order to create shared curricula. I have for example cross-referenced material in the Archaeology of Portus course to Coursera and Brown’s Archaeology’s Dirty Little Secrets course, and to the Coursera and Yale Roman Architecture course. In the coming weeks we …
New Web Science Institute Blog
by Lisa Harris via Digital Economy USRG
Since the start of 2014, we have migrated existing posts from this blog to the new Web Science Institute blog https://blog.soton.ac.uk/wsi – please check this out for the latest content The DE emailing list has also been re-titled WSI – its membership list is unchanged.
Energy USRG – EPSRC Summer Bursaries 2014
by Natalie Sims
Natalie Sims – Working towards developing sustainable biofuels
Chemistry Undergraduate, Natalie Sims, has good cause to celebrate. She has just won a Summer Vacation Bursary. These bursaries, part of the EPSRC vacation bursary programme, provide funding for exceptional students to gain first-hand experience of interdisciplinary research. They are awarded annually and allow outstanding students to gain valuable work experience.
Dwindling energy supplies have given a major impetus towards developing renewable energy technologies; and biomass feedstocks such as cellulose, have considerable potential for the generation of second generation biofuels and renewable plastics using heterogeneous catalysts. The cellulose, which typically might come from poplar, for example, can be transformed into biomass-derived FDCA, a chemical which can serve as a sustainable substitute for terephthalic acid in the synthesis of polyethylene terephthalate, or PET. This biomass-derived FDCA can be generated by catalytic methods and has potential applications in the production of renewable plastics and biofuel intermediates. Natalie will gain a real insight into an interdisciplinary research career that adopts the principles of Chemistry for renewable energy applications. Building upon knowledge gained from her Chemistry degree, she will develop her own design tools for creating discrete active sites for enabling specific transformations involving biomass feedstocks, using a hierarchical porous structure. She will also have the opportunity to fully characterise her materials using a range of techniques including powder X-ray diffraction, BET, X-ray absorption spectroscopy, electron microscopy and 3D tomography.